TOOLBOX CONTENTS

As of 1/13/08, this list is a little bit out of date.

Folder: diva_main

BIB2DIVA -- put bib file into diva project

CONNECT_CMD -- connects dots on map

CREATENEWDB -- make a blank database

CREATENEWDB_PAT -- make a new patent database

GETCOORD -- get coordinates for a 2D map

GROUP_CMD -- execute a function on map group of tfgui

PATENT_CONVERT -- script to convert a patent database

PROJECT_CMD -- execute items in the project menu

PUTADJACENCY -- put adjacency matrix in DIVA

PUT_VIEW_TABLE -- Put a list of papers in dbase 'view' table

PUTNEWCONNECT -- Add similarity matrix

QUERY_CMD -- used for query functions

QUERYGUI -- code of query GUI

SELECTRECT -- performs an action after dragging a rectangle on a map

SIM_CMD -- menu functions for similarity

T1MOVIE -- makes a timeline movie

TABLEGUI -- M-file for tablegui.fig

TFGUI1 -- Application M-file for tfgui1.fig

TFWORK -- tech forecasting workstation main program

THRESHSLIDER -- slider service routine

TIMEPER -- highlight time period on maps

TMOVIE -- make a timeline movie

Folder: data_input

ASSIGNEE_MATRIX: -- routine to build patent-assignee matrix

CITE_KEY_RENUM -- renumber cite_keys to eliminate missing keys.

GET_A_P_R -- Gets the paper-reference correspondence list

ID_MATRIX -- Loads paper to paper id term matrix into DIVA

MAKE_R_YP_MATRIX -- Make reference by citing paper year matrix

MAKE_R_YP_MATRIX -- Make reference by citing paper year matrix

P_AP_MATRIX -- Loads paper to paper author matrix into DIVA

P_AR_MATRIX -- Get paper to ref author matrix

p_de_MATRIX -- Loads paper to paper de term matrix into DIVA

P_JR_MATRIX -- Get paper to ref journal matrix

P_PJ_MATRIX -- Loads paper to paper to paper journal matrix

P_TERM1_MATRIX -- routine to get 1 word terms from database

R_YR_MATRIX -- Make reference by reference year matrix

REF_MATRIX -- Gets paper-ref matrix from dbase

REF_MATRIX_BY_PAPER -- put an occurrence matrix in lower triangular form

Folder: clustering

COOCCUR -- routine to cluster row items from matrix

COOCUR_GUI -- M-file for coocur_gui.fig

LINKAGE_SIM -- MATLAB clustering routine modified to use similarity

PUT_CLUSTERS_AUT -- put author clusters in the database

PUT_CLUSTERS_BIB -- put bib coupling clusters in the database

PUT_CLUSTERS_COC -- put cocitation clusters in the database

PUT_CLUSTERS_WORD1 -- puts 1 word term clusters in the database

SEMINAL -- Get a list of indexes of key papers

Folder: clustering/OVERLAP

OVERLAP1 -- overlap using sorted indices

OVERLAP2 -- function to find sparse overlap matrix multiply by sorting and manually

OVERLAP3 -- alternate overlap function

OVERLAPS -- brute force overlap function

OVERLAPS1 -- fuction to do sparse overlap matrix multiply by doing vector operations

Folder: map

BIB_LABELS -- put bib coupling cluster labels on a current figure

CLEAN_AR_NAMES -- disambiguate reference author names

COMBINE_ALIAS -- disambiguate p_ar matrix

CROSSHAIR -- put crosshairs on a crossmap

DELETEMAP -- sets deleted map pointer to 0

FIG2HTML -- Converts figure coordinates to html image coordinates

FREQMOD -- Make map circles proportional to cited frequency

GCMAP -- get the current tf map

GETBOX -- gets a box on current fig

HISTORIOGRAM -- puts connection matrix of historiogram in project

MAKE_TIMELINE_HTML -- Make timeline webpage

MAKE_XMAP_P_AP_HTML -- Make html crossmap for paper to paper author

MAKE_XMAP_P_AR_HTML -- Make html crossmap for paper to ref author

MAKE_XMAP_P_R_HTML -- Make html crossmap for paper to references

MAKE_XMAP_YP_AR_HTML -- Make html reference author usage map

MAKE_XMAP_YP_R_HTML -- Make html usage map for references

MAKEDENDRO -- makes the set of lines for a dendrogram

MAP_CMD -- function which draws a map

ORDERDENDRO -- find order for a dendrogram plot.

RECLUSTER -- apply a new threshold to hierarchically clustered data

REDSIM -- reduces a similarity matrix

STUBZ -- function to convert tree to a shorter tree

SUBTREES -- finds the start and ending leaves of dendrogram subtree

TMAP -- Make timeline plot

TRANSZ -- Translate output of LINKAGE into another format.

TSPORDER -- seriate a dendrogram using simulated annealing algorithm

XMAP -- plot frame crossmap

XMAPDOT_ASSIGNEE -- make patent to assignee crossmap

XMAPDOT_ID -- make paper to ID terms crossmap

XMAPDOT_ONEWORD -- make paper to one word terms crossmap

XMAPDOT_P_AP -- Make crossmap paper to paper author

XMAPDOT_P_AR -- Make crossmap paper to ref author

XMAPDOT_REF -- make paper to reference crossmap

XMAPDOT_REF_PAT -- make a patent to ref patent xmap

XMAPDOT_YP_AR -- make ref author usage plot

XMAPDOT_YP_R -- make reference usage xmap

XMAPDOT_YR_R -- make reference year timeline

Folder: plot_all_case_studies

GET_PROJECTS -- get list of projects to process

HTML_CLCOF_AP_P -- html plots of coauthor clustering coeff distribution

HTML_CLCOF_P_R -- html plots of bib coupling clust. coefficient distribution

HTML_DYAD_AP_P -- html plots of paper author per paper distributions

HTML_DYAD_JR_P -- html plots of reference journal per paper

PLOT_DYAD_P_AP -- html plot papers per author, all projects

HTML_DYAD_P_AR -- plot reference author per paper distribution, all projects

PLOT_DYAD_P_R -- html plot paper per reference distribution, all projects

HTML_DYAD_R_P -- Make html crossmap for reference per paper distribution

MAKE_P_AR_MATRIX -- make/store all project paper to ref author matrices

MAKE_P_JR_MATRIX -- make/store all project paper to reference journal matrices

MAKE_P_PJ_MATRIX -- make/store all paper to paper journal matrices

MAKE_R_YR_MATRIX -- make reference to reference year matrices, all projects

MAKE_YR_PER_YP_HTML -- html plots of referage age

PLOT_CLCOF_AP_P -- plot coauthor clustering. coef. distribution

PLOT_CLCOF_P_R -- plot bib. coupling. clustering coefficient distribution

PLOT_DYDAD_AP_P -- plots of paper author per paper distribution

PLOT_DYAD_JR_P -- html plots of reference journal per paper

PLOT_DYAD_P_AP -- plot papers per author, all projects

PLOT_DYAD_AR_P -- plot reference author per paper distribution, all projects

PLOT_DYAD_P_R -- plot paper per reference distribution, all projects

SAVE_MATRICES -- save matrices as mat files for posting on web

TABLES: -- PROGRAM TO PRINT TABLE OF CHARACTERISTICS OF A SERIES OF PAPER COLLECTIONS

TABLES_HTML -- print table of project characteristics as web page

Folder: plots

AUTHOR_PAPER_CLCOF_DIST -- plot co-author clustering coefficient distribution

BIB_COOC_DIST -- plot the bibliographic coupling distribution

CITES_PER_PAPER -- plot reference per paper distribution

CLUST_COEFF -- computes clustering coefficient distribution

HIGHLIGHT -- plot group dots on all dotmaps

MAKE_CITE_DIST -- routine to estimate a Riemann zeta distribution

PAPER_REF_CLCOF_DIST -- plot bib coupling clustering coeff distribution

PAPER_REF_COOC_DIST -- plot bib coupling distribution

PLOT_PR -- plot a diagram of the paper reference matrix

PLOT_RANK_AP -- plots map of paper authors, y as dendrogra, x as log of rank

PLOT_RANK_AR -- plot reference authors, y as dendrogram, x as log of rank

REF_COOC_DIST -- plot cocitation distribution

REF_DIST -- plot paper per reference distribution

REF_DIST_COMP -- comparison plot of two paper per reference distributions

REF_DIST_COMP_CUM -- plot comparison of two cumulative paper per reference distributions

Folder: report

DBASE_SELECT -- Call dialog box to select current database

DEBLANK -- Remove trailing blanks.

PRBIBV2 -- Prints a report on bib coupling clusters

PRCOCV1 -- Print a report on cocitation clusters

PRINTABSTRACTSV3 -- Print bib coupling cluster report with abstracts

PRINTPAT -- Print patent bib coupling cluster report

PRPAT_REF -- Print patent cocitation cluster report

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